J3_9GR1_027

3D structure

PDB id

9GR1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-TEC complex in delivery state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.17 Å

Loop

Sequence

UCGACC*GAAA*UA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9GR1_027 not in the Motif Atlas

Homologous match to J3_5J7L_043

Geometric discrepancy: 0.0726

The information below is about J3_5J7L_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92705.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW

Number of instances in this motif group

1

Unit IDs

9GR1|1|a|U|1346
9GR1|1|a|C|1347
9GR1|1|a|G|1348
9GR1|1|a|A|1349
9GR1|1|a|C|1350
9GR1|1|a|C|1351
*
9GR1|1|a|G|1384
9GR1|1|a|A|1385
9GR1|1|a|A|1386
9GR1|1|a|A|1387
*
9GR1|1|a|U|1404
9GR1|1|a|A|1405

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain s

50S ribosomal protein L23