J3_9GR1_033

3D structure

PDB id

9GR1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-TEC complex in delivery state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.17 Å

Loop

Sequence

CAUC*GUA*UUUAAAG

Length

14 nucleotides

Bulged bases

9GR1|1|a|A|2522, 9GR1|1|a|U|2523

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9GR1_033 not in the Motif Atlas

Homologous match to J3_5J7L_046

Geometric discrepancy: 0.0492

The information below is about J3_5J7L_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.5

Basepair signature

cWW-tWH-cHW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

9GR1|1|a|C|2521
9GR1|1|a|A|2522
9GR1|1|a|U|2523
9GR1|1|a|C|2524
*
9GR1|1|a|G|2549
9GR1|1|a|U|2550
9GR1|1|a|A|2551
*
9GR1|1|a|U|2565
9GR1|1|a|U|2566
9GR1|1|a|U|2567
9GR1|1|a|A|2568
9GR1|1|a|A|2569
9GR1|1|a|A|2570
9GR1|1|a|G|2571

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain d

Large ribosomal subunit protein uL3

Chain j

50S ribosomal protein L14