J3_9GUL_006

3D structure

PDB id

9GUL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of FLuc-XBP1u+ stalled human 60S ribosome nascent chain complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CC*GAGGGAGCGAGACCCGUCGCCG*CACGGGG

Length

31 nucleotides

Bulged bases

9GUL|1|L5|G|959, 9GUL|1|L5|C|962, 9GUL|1|L5|A|964, 9GUL|1|L5|G|965, 9GUL|1|L5|C|967, 9GUL|1|L5|C|968, 9GUL|1|L5|U|971, 9GUL|1|L5|C|1280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9GUL|1|L5|C|712
9GUL|1|L5|C|713
*
9GUL|1|L5|G|955
9GUL|1|L5|A|956
9GUL|1|L5|G|957
9GUL|1|L5|G|958
9GUL|1|L5|G|959
9GUL|1|L5|A|960
9GUL|1|L5|G|961
9GUL|1|L5|C|962
9GUL|1|L5|G|963
9GUL|1|L5|A|964
9GUL|1|L5|G|965
9GUL|1|L5|A|966
9GUL|1|L5|C|967
9GUL|1|L5|C|968
9GUL|1|L5|C|969
9GUL|1|L5|G|970
9GUL|1|L5|U|971
9GUL|1|L5|C|972
9GUL|1|L5|G|973
9GUL|1|L5|C|974
9GUL|1|L5|C|975
9GUL|1|L5|G|976
*
9GUL|1|L5|C|1278
9GUL|1|L5|A|1279
9GUL|1|L5|C|1280
9GUL|1|L5|G|1281
9GUL|1|L5|G|1282
9GUL|1|L5|G|1283
9GUL|1|L5|G|1284

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

Large ribosomal subunit protein uL4

Chain LE

Large ribosomal subunit protein eL6

Chain LF

Large ribosomal subunit protein uL30

Chain Le

60S ribosomal protein L32