J3_9GUL_019

3D structure

PDB id

9GUL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of FLuc-XBP1u+ stalled human 60S ribosome nascent chain complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GUC*GCCU(5MC)ACGAUCC*(OMG)GUGUC

Length

21 nucleotides

Bulged bases

9GUL|1|L5|C|4337, 9GUL|1|L5|U|4374

QA status

Modified nucleotides: 5MC, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9GUL|1|L5|G|4228
9GUL|1|L5|U|4229
9GUL|1|L5|C|4230
*
9GUL|1|L5|G|4331
9GUL|1|L5|C|4332
9GUL|1|L5|C|4333
9GUL|1|L5|U|4334
9GUL|1|L5|5MC|4335
9GUL|1|L5|A|4336
9GUL|1|L5|C|4337
9GUL|1|L5|G|4338
9GUL|1|L5|A|4339
9GUL|1|L5|U|4340
9GUL|1|L5|C|4341
9GUL|1|L5|C|4342
*
9GUL|1|L5|OMG|4370
9GUL|1|L5|G|4371
9GUL|1|L5|U|4372
9GUL|1|L5|G|4373
9GUL|1|L5|U|4374
9GUL|1|L5|C|4375

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LQ

60S ribosomal protein L18

Chain LT

60S ribosomal protein L21

Chain La

60S ribosomal protein L27a

Chain Lo

60S ribosomal protein L36a