J3_9GUP_007

3D structure

PDB id

9GUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S mRNA delivery complex (open head)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9GUP_007 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.0744

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85722.1

Basepair signature

cWW-F-F-cSS-F-cWW-tHH-tWW-F-tWH-tHS-cSH-cWW

Number of instances in this motif group

5

Unit IDs

9GUP|1|A|C|936
9GUP|1|A|A|937
9GUP|1|A|A|938
9GUP|1|A|G|939
*
9GUP|1|A|C|1344
9GUP|1|A|U|1345
9GUP|1|A|A|1346
9GUP|1|A|G|1347
9GUP|1|A|U|1348
9GUP|1|A|A|1349
9GUP|1|A|A|1350
*
9GUP|1|A|U|1372
9GUP|1|A|G|1373
9GUP|1|A|A|1374
9GUP|1|A|A|1375
9GUP|1|A|U|1376
9GUP|1|A|A|1377
9GUP|1|A|C|1378
9GUP|1|A|G|1379

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain H

30S ribosomal protein S7

Chain J

30S ribosomal protein S9