J3_9GUQ_003

3D structure

PDB id

9GUQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S PIC (Pre-Initiation complex)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGG*CUUG*CG

Length

9 nucleotides

Bulged bases

9GUQ|1|A|U|653

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9GUQ_003 not in the Motif Atlas

Geometric match to J3_4LFB_011

Geometric discrepancy: 0.0954

The information below is about J3_4LFB_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_56052.5

Basepair signature

cWW-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

9GUQ|1|A|C|586
9GUQ|1|A|G|587
9GUQ|1|A|G|588
*
9GUQ|1|A|C|651
9GUQ|1|A|U|652
9GUQ|1|A|U|653
9GUQ|1|A|G|654
*
9GUQ|1|A|C|754
9GUQ|1|A|G|755

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain I

30S ribosomal protein S8

Chain M

30S ribosomal protein S12

Chain P

Small ribosomal subunit protein uS15

Chain R

30S ribosomal protein S17