J3_9GUQ_011

3D structure

PDB id

9GUQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S PIC (Pre-Initiation complex)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

9GUQ|1|A|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9GUQ_011 not in the Motif Atlas

Homologous match to J3_5J7L_053

Geometric discrepancy: 0.131

The information below is about J3_5J7L_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

9GUQ|1|A|C|990
9GUQ|1|A|U|991
9GUQ|1|A|U|992
9GUQ|1|A|G|993
9GUQ|1|A|A|994
9GUQ|1|A|C|995
9GUQ|1|A|A|996
9GUQ|1|A|U|997
*
9GUQ|1|A|A|1044
9GUQ|1|A|C|1045
9GUQ|1|A|A|1046
9GUQ|1|A|G|1047
*
9GUQ|1|A|C|1210
9GUQ|1|A|U|1211
9GUQ|1|A|U|1212
9GUQ|1|A|A|1213
9GUQ|1|A|C|1214
9GUQ|1|A|G|1215

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain O

30S ribosomal protein S14