3D structure

PDB id
9GUQ (explore in PDB, NAKB, or RNA 3D Hub)
Description
30S PIC (Pre-Initiation complex)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
UAU*AGACUGC*GAGGAAGGUG
Length
20 nucleotides
Bulged bases
9GUQ|1|A|U|1183
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_9GUQ_016 not in the Motif Atlas
Homologous match to J3_5J7L_054
Geometric discrepancy: 0.1192
The information below is about J3_5J7L_054
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_17791.2
Basepair signature
cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW
Number of instances in this motif group
2

Unit IDs

9GUQ|1|A|U|1116
9GUQ|1|A|A|1117
9GUQ|1|A|U|1118
*
9GUQ|1|A|A|1155
9GUQ|1|A|G|1156
9GUQ|1|A|A|1157
9GUQ|1|A|C|1158
9GUQ|1|A|U|1159
9GUQ|1|A|G|1160
9GUQ|1|A|C|1161
*
9GUQ|1|A|G|1175
9GUQ|1|A|A|1176
9GUQ|1|A|G|1177
9GUQ|1|A|G|1178
9GUQ|1|A|A|1179
9GUQ|1|A|A|1180
9GUQ|1|A|G|1181
9GUQ|1|A|G|1182
9GUQ|1|A|U|1183
9GUQ|1|A|G|1184

Current chains

Chain A
16S ribosomal RNA

Nearby chains

Chain C
30S ribosomal protein S2
Chain H
30S ribosomal protein S7
Chain J
30S ribosomal protein S9
Chain K
30S ribosomal protein S10
Chain O
30S ribosomal protein S14

Coloring options:


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