J3_9GUT_007

3D structure

PDB id

9GUT (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S mRNA delivery complex (bS1 resolved)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9GUT_007 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.0608

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.4

Basepair signature

cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW

Number of instances in this motif group

4

Unit IDs

9GUT|1|A|C|936
9GUT|1|A|A|937
9GUT|1|A|A|938
9GUT|1|A|G|939
*
9GUT|1|A|C|1344
9GUT|1|A|U|1345
9GUT|1|A|A|1346
9GUT|1|A|G|1347
9GUT|1|A|U|1348
9GUT|1|A|A|1349
9GUT|1|A|A|1350
*
9GUT|1|A|U|1372
9GUT|1|A|G|1373
9GUT|1|A|A|1374
9GUT|1|A|A|1375
9GUT|1|A|U|1376
9GUT|1|A|A|1377
9GUT|1|A|C|1378
9GUT|1|A|G|1379

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain H

30S ribosomal protein S7

Chain J

30S ribosomal protein S9