J3_9GUU_007

3D structure

PDB id

9GUU (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S mRNA delivery complex (consensus)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9GUU_007 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.054

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85722.1

Basepair signature

cWW-F-F-cSS-F-cWW-tHH-tWW-F-tWH-tHS-cSH-cWW

Number of instances in this motif group

5

Unit IDs

9GUU|1|A|C|936
9GUU|1|A|A|937
9GUU|1|A|A|938
9GUU|1|A|G|939
*
9GUU|1|A|C|1344
9GUU|1|A|U|1345
9GUU|1|A|A|1346
9GUU|1|A|G|1347
9GUU|1|A|U|1348
9GUU|1|A|A|1349
9GUU|1|A|A|1350
*
9GUU|1|A|U|1372
9GUU|1|A|G|1373
9GUU|1|A|A|1374
9GUU|1|A|A|1375
9GUU|1|A|U|1376
9GUU|1|A|A|1377
9GUU|1|A|C|1378
9GUU|1|A|G|1379

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain H

30S ribosomal protein S7

Chain J

30S ribosomal protein S9