J3_9GUX_011

3D structure

PDB id

9GUX (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S-TEC (TEC in expressome position) Inactive state 1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

9GUX|1|A|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9GUX_011 not in the Motif Atlas

Homologous match to J3_5J7L_053

Geometric discrepancy: 0.1185

The information below is about J3_5J7L_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

9GUX|1|A|C|990
9GUX|1|A|U|991
9GUX|1|A|U|992
9GUX|1|A|G|993
9GUX|1|A|A|994
9GUX|1|A|C|995
9GUX|1|A|A|996
9GUX|1|A|U|997
*
9GUX|1|A|A|1044
9GUX|1|A|C|1045
9GUX|1|A|A|1046
9GUX|1|A|G|1047
*
9GUX|1|A|C|1210
9GUX|1|A|U|1211
9GUX|1|A|U|1212
9GUX|1|A|A|1213
9GUX|1|A|C|1214
9GUX|1|A|G|1215

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain O

30S ribosomal protein S14