J3_9GXX_011

3D structure

PDB id

9GXX (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with doublet-decoding tRNASer3 bound to A-site GCA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.61 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

9GXX|1|A|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9GXX_011 not in the Motif Atlas

Homologous match to J3_5J7L_053

Geometric discrepancy: 0.1273

The information below is about J3_5J7L_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

9GXX|1|A|C|990
9GXX|1|A|U|991
9GXX|1|A|U|992
9GXX|1|A|G|993
9GXX|1|A|A|994
9GXX|1|A|C|995
9GXX|1|A|A|996
9GXX|1|A|U|997
*
9GXX|1|A|A|1044
9GXX|1|A|C|1045
9GXX|1|A|A|1046
9GXX|1|A|G|1047
*
9GXX|1|A|C|1210
9GXX|1|A|U|1211
9GXX|1|A|U|1212
9GXX|1|A|A|1213
9GXX|1|A|C|1214
9GXX|1|A|G|1215

Current chains

Chain A

16S rRNA

Nearby chains

Chain N

Small ribosomal subunit protein uS14