J3_9GXX_021
3D structure
- PDB id
- 9GXX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome with doublet-decoding tRNASer3 bound to A-site GCA codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.61 Å
Loop
- Sequence
- AC*GAUAAGC*GAUUU
- Length
- 14 nucleotides
- Bulged bases
- 9GXX|1|a|U|72, 9GXX|1|a|A|74
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9GXX_021 not in the Motif Atlas
- Homologous match to J3_5J7L_037
- Geometric discrepancy: 0.0783
- The information below is about J3_5J7L_037
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_35667.2
- Basepair signature
- cWW-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
9GXX|1|a|A|56
9GXX|1|a|C|57
*
9GXX|1|a|G|70
9GXX|1|a|A|71
9GXX|1|a|U|72
9GXX|1|a|A|73
9GXX|1|a|A|74
9GXX|1|a|G|75
9GXX|1|a|C|76
*
9GXX|1|a|G|110
9GXX|1|a|A|111
9GXX|1|a|U|112
9GXX|1|a|U|113
9GXX|1|a|U|114
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 1
- Large ribosomal subunit protein bL34
- Chain s
- Large ribosomal subunit protein uL23
- Chain x
- Large ribosomal subunit protein uL29
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