J3_9GXX_022

3D structure

PDB id

9GXX (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with doublet-decoding tRNASer3 bound to A-site GCA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.61 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

9GXX|1|a|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9GXX_022 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.0579

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

9GXX|1|a|G|297
9GXX|1|a|G|298
9GXX|1|a|A|299
9GXX|1|a|A|300
9GXX|1|a|G|301
*
9GXX|1|a|C|316
9GXX|1|a|G|317
9GXX|1|a|C|318
9GXX|1|a|G|319
9GXX|1|a|A|320
9GXX|1|a|U|321
9GXX|1|a|A|322
9GXX|1|a|C|323
9GXX|1|a|A|324
9GXX|1|a|G|325
*
9GXX|1|a|C|337
9GXX|1|a|G|338
9GXX|1|a|U|339
9GXX|1|a|A|340
9GXX|1|a|C|341

Current chains

Chain a

23S rRNA

Nearby chains

Chain e

Large ribosomal subunit protein uL4

Chain t

Large ribosomal subunit protein uL24