J3_9GXX_032
3D structure
- PDB id
- 9GXX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome with doublet-decoding tRNASer3 bound to A-site GCA codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.61 Å
Loop
- Sequence
- CUAAU*AGGUUAG*CAUAAG
- Length
- 18 nucleotides
- Bulged bases
- 9GXX|1|a|U|2334, 9GXX|1|a|A|2336
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9GXX_032 not in the Motif Atlas
- Homologous match to J3_5J7L_071
- Geometric discrepancy: 0.1072
- The information below is about J3_5J7L_071
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_44961.1
- Basepair signature
- cWW-tSH-F-cWW-F-tHW-cWW-tWW-cWW-F
- Number of instances in this motif group
- 1
Unit IDs
9GXX|1|a|C|2295
9GXX|1|a|U|2296
9GXX|1|a|A|2297
9GXX|1|a|A|2298
9GXX|1|a|U|2299
*
9GXX|1|a|A|2317
9GXX|1|a|G|2318
9GXX|1|a|G|2319
9GXX|1|a|U|2320
9GXX|1|a|U|2321
9GXX|1|a|A|2322
9GXX|1|a|G|2323
*
9GXX|1|a|C|2332
9GXX|1|a|A|2333
9GXX|1|a|U|2334
9GXX|1|a|A|2335
9GXX|1|a|A|2336
9GXX|1|a|G|2337
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain Z
- Transfer RNA; tRNA
- Chain b
- 5S ribosomal RNA; 5S rRNA
- Chain f
- Large ribosomal subunit protein uL5
- Chain n
- Large ribosomal subunit protein uL18
- Chain v
- Large ribosomal subunit protein bL27
Coloring options: