3D structure

PDB id
9GXX (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome with doublet-decoding tRNASer3 bound to A-site GCA codon
Experimental method
ELECTRON MICROSCOPY
Resolution
2.61 Å

Loop

Sequence
CAUC*GUA*UUUAAAG
Length
14 nucleotides
Bulged bases
9GXX|1|a|A|2518, 9GXX|1|a|U|2519
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_9GXX_033 not in the Motif Atlas
Homologous match to J3_5J7L_046
Geometric discrepancy: 0.0694
The information below is about J3_5J7L_046
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_32601.5
Basepair signature
cWW-tWH-cHW-F-cWW-tSS-F-cWW
Number of instances in this motif group
4

Unit IDs

9GXX|1|a|C|2517
9GXX|1|a|A|2518
9GXX|1|a|U|2519
9GXX|1|a|C|2520
*
9GXX|1|a|G|2545
9GXX|1|a|U|2546
9GXX|1|a|A|2547
*
9GXX|1|a|U|2561
9GXX|1|a|U|2562
9GXX|1|a|U|2563
9GXX|1|a|A|2564
9GXX|1|a|A|2565
9GXX|1|a|A|2566
9GXX|1|a|G|2567

Current chains

Chain a
23S rRNA

Nearby chains

Chain d
Large ribosomal subunit protein uL3
Chain j
Large ribosomal subunit protein uL14

Coloring options:


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