J3_9GXX_036
3D structure
- PDB id
- 9GXX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome with doublet-decoding tRNASer3 bound to A-site GCA codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.61 Å
Loop
- Sequence
- GCCGUAG*CGC*GGAAC
- Length
- 15 nucleotides
- Bulged bases
- 9GXX|1|b|U|14, 9GXX|1|b|A|108
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9GXX_036 not in the Motif Atlas
- Homologous match to J3_5J7L_049
- Geometric discrepancy: 0.0837
- The information below is about J3_5J7L_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_89095.1
- Basepair signature
- cWW-F-F-F-tHS-F-cWW-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
9GXX|1|b|G|10
9GXX|1|b|C|11
9GXX|1|b|C|12
9GXX|1|b|G|13
9GXX|1|b|U|14
9GXX|1|b|A|15
9GXX|1|b|G|16
*
9GXX|1|b|C|68
9GXX|1|b|G|69
9GXX|1|b|C|70
*
9GXX|1|b|G|106
9GXX|1|b|G|107
9GXX|1|b|A|108
9GXX|1|b|A|109
9GXX|1|b|C|110
Current chains
- Chain b
- 5S rRNA
Nearby chains
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
- Chain n
- Large ribosomal subunit protein uL18
- Chain u
- Large ribosomal subunit protein bL25
- Chain v
- Large ribosomal subunit protein bL27
Coloring options: