J3_9GY4_005
3D structure
- PDB id
- 9GY4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S ribosomal subunit in complex with E3-UFM1 ligase and RQC machinery components NEMF and LTN1 (Composite map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- UUGAAAAGAAC*GAGUUCAAGAGGGCG*CA
- Length
- 28 nucleotides
- Bulged bases
- 9GY4|1|5|G|409, 9GY4|1|5|G|413
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9GY4_005 not in the Motif Atlas
- Homologous match to J3_8CRE_006
- Geometric discrepancy: 0.3034
- The information below is about J3_8CRE_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_92134.2
- Basepair signature
- cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
9GY4|1|5|U|380
9GY4|1|5|U|381
9GY4|1|5|G|382
9GY4|1|5|A|383
9GY4|1|5|A|384
9GY4|1|5|A|385
9GY4|1|5|A|386
9GY4|1|5|G|387
9GY4|1|5|A|388
9GY4|1|5|A|389
9GY4|1|5|C|390
*
9GY4|1|5|G|401
9GY4|1|5|A|402
9GY4|1|5|G|403
9GY4|1|5|U|404
9GY4|1|5|U|405
9GY4|1|5|C|406
9GY4|1|5|A|407
9GY4|1|5|A|408
9GY4|1|5|G|409
9GY4|1|5|A|410
9GY4|1|5|G|411
9GY4|1|5|G|412
9GY4|1|5|G|413
9GY4|1|5|C|414
9GY4|1|5|G|415
*
9GY4|1|8|C|19
9GY4|1|8|A|20
Current chains
- Chain 5
- 28S rRNA
- Chain 8
- 5.8S rRNA
Nearby chains
- Chain C
- DDRGK domain-containing protein 1
- Chain LC
- 60S ribosomal protein L4
- Chain LP
- 60S ribosomal protein L17
- Chain LY
- 60S ribosomal protein L26
- Chain Ll
- 60S ribosomal protein L39
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