J3_9GY4_009
3D structure
- PDB id
- 9GY4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S ribosomal subunit in complex with E3-UFM1 ligase and RQC machinery components NEMF and LTN1 (Composite map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CAG*CGUAG*UCCG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9GY4_009 not in the Motif Atlas
- Homologous match to J3_8CRE_010
- Geometric discrepancy: 0.1368
- The information below is about J3_8CRE_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_44724.7
- Basepair signature
- cWW-tHS-F-cWW-tHS-cWW-F
- Number of instances in this motif group
- 6
Unit IDs
9GY4|1|5|C|1546
9GY4|1|5|A|1547
9GY4|1|5|G|1548
*
9GY4|1|5|C|1580
9GY4|1|5|G|1581
9GY4|1|5|U|1582
9GY4|1|5|A|1583
9GY4|1|5|G|1584
*
9GY4|1|5|U|1609
9GY4|1|5|C|1610
9GY4|1|5|C|1611
9GY4|1|5|G|1612
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain LR
- 60S ribosomal protein L19
- Chain Lg
- 60S ribosomal protein L34
- Chain Lp
- 60S ribosomal protein L37a
- Chain a
- 60S ribosomal protein L8
Coloring options: