J3_9H3S_003
3D structure
- PDB id
- 9H3S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 50S subunit precursor C-CP_YjgA_L22
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.16 Å
Loop
- Sequence
- AC*GAUAAGC*GAUUU
- Length
- 14 nucleotides
- Bulged bases
- 9H3S|1|A|U|72, 9H3S|1|A|A|74
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9H3S_003 not in the Motif Atlas
- Homologous match to J3_5J7L_037
- Geometric discrepancy: 0.1088
- The information below is about J3_5J7L_037
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_35667.2
- Basepair signature
- cWW-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
9H3S|1|A|A|56
9H3S|1|A|C|57
*
9H3S|1|A|G|70
9H3S|1|A|A|71
9H3S|1|A|U|72
9H3S|1|A|A|73
9H3S|1|A|A|74
9H3S|1|A|G|75
9H3S|1|A|C|76
*
9H3S|1|A|G|110
9H3S|1|A|A|111
9H3S|1|A|U|112
9H3S|1|A|U|113
9H3S|1|A|U|114
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 2
- Large ribosomal subunit protein bL34
- Chain T
- Large ribosomal subunit protein uL23
- Chain Y
- Large ribosomal subunit protein uL29
Coloring options: