J3_9H3S_004

3D structure

PDB id

9H3S (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C-CP_YjgA_L22

Experimental method

ELECTRON MICROSCOPY

Resolution

4.16 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

9H3S|1|A|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9H3S_004 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.1664

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

9H3S|1|A|G|297
9H3S|1|A|G|298
9H3S|1|A|A|299
9H3S|1|A|A|300
9H3S|1|A|G|301
*
9H3S|1|A|C|316
9H3S|1|A|G|317
9H3S|1|A|C|318
9H3S|1|A|G|319
9H3S|1|A|A|320
9H3S|1|A|U|321
9H3S|1|A|A|322
9H3S|1|A|C|323
9H3S|1|A|A|324
9H3S|1|A|G|325
*
9H3S|1|A|C|337
9H3S|1|A|G|338
9H3S|1|A|U|339
9H3S|1|A|A|340
9H3S|1|A|C|341

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

Large ribosomal subunit protein uL4

Chain U

Large ribosomal subunit protein uL24