J3_9H3S_006

3D structure

PDB id

9H3S (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C-CP_YjgA_L22

Experimental method

ELECTRON MICROSCOPY

Resolution

4.16 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9H3S_006 not in the Motif Atlas

Homologous match to J3_5J7L_039

Geometric discrepancy: 0.1236

The information below is about J3_5J7L_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.7

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

9H3S|1|A|C|698
9H3S|1|A|A|699
9H3S|1|A|G|700
*
9H3S|1|A|C|732
9H3S|1|A|G|733
9H3S|1|A|A|734
9H3S|1|A|A|735
9H3S|1|A|C|736
*
9H3S|1|A|G|760
9H3S|1|A|A|761
9H3S|1|A|U|762
9H3S|1|A|G|763

Current chains

Chain A

23S ribosomal RNA

Nearby chains