J3_9H3V_001

3D structure

PDB id

9H3V (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C-CP_L2-L28

Experimental method

ELECTRON MICROSCOPY

Resolution

3.55 Å

Loop

Sequence

GC*GCGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9H3V_001 not in the Motif Atlas

Homologous match to J3_4WF9_010

Geometric discrepancy: 0.1535

The information below is about J3_4WF9_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_60031.2

Basepair signature

cWW-cWW-cWW-tWH-tSH-F-F

Number of instances in this motif group

7

Unit IDs

9H3V|1|A|G|30
9H3V|1|A|C|31
*
9H3V|1|A|G|474
9H3V|1|A|C|475
9H3V|1|A|G|476
9H3V|1|A|A|477
9H3V|1|A|A|478
9H3V|1|A|A|479
9H3V|1|A|A|480
9H3V|1|A|G|481
*
9H3V|1|A|C|509
9H3V|1|A|C|510

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain Q

Large ribosomal subunit protein bL20

Chain U

Large ribosomal subunit protein uL24