3D structure

PDB id
9H3V (explore in PDB, NAKB, or RNA 3D Hub)
Description
50S subunit precursor C-CP_L2-L28
Experimental method
ELECTRON MICROSCOPY
Resolution
3.55 Å

Loop

Sequence
UGAUCUA*UGG*CAAA
Length
14 nucleotides
Bulged bases
9H3V|1|A|U|686, 9H3V|1|A|A|792, 9H3V|1|A|A|793
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_9H3V_005 not in the Motif Atlas
Homologous match to J3_5J7L_038
Geometric discrepancy: 0.1595
The information below is about J3_5J7L_038
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_64189.2
Basepair signature
cWW-tWH-cWW-tSW-F-F-cWW
Number of instances in this motif group
7

Unit IDs

9H3V|1|A|U|683
9H3V|1|A|G|684
9H3V|1|A|A|685
9H3V|1|A|U|686
9H3V|1|A|C|687
9H3V|1|A|U|688
9H3V|1|A|A|689
*
9H3V|1|A|U|773
9H3V|1|A|G|774
9H3V|1|A|G|775
*
9H3V|1|A|C|791
9H3V|1|A|A|792
9H3V|1|A|A|793
9H3V|1|A|A|794

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain 2
Large ribosomal subunit protein bL34
Chain C
Large ribosomal subunit protein uL2

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2082 s