J3_9H3V_006

3D structure

PDB id

9H3V (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C-CP_L2-L28

Experimental method

ELECTRON MICROSCOPY

Resolution

3.55 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9H3V_006 not in the Motif Atlas

Homologous match to J3_9DFE_008

Geometric discrepancy: 0.1426

The information below is about J3_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.7

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

9H3V|1|A|C|698
9H3V|1|A|A|699
9H3V|1|A|G|700
*
9H3V|1|A|C|732
9H3V|1|A|G|733
9H3V|1|A|A|734
9H3V|1|A|A|735
9H3V|1|A|C|736
*
9H3V|1|A|G|760
9H3V|1|A|A|761
9H3V|1|A|U|762
9H3V|1|A|G|763

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

Large ribosomal subunit protein uL2