J3_9H3Z_004

3D structure

PDB id

9H3Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

mature 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

9H3Z|1|A|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9H3Z_004 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.1788

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

9H3Z|1|A|G|297
9H3Z|1|A|G|298
9H3Z|1|A|A|299
9H3Z|1|A|A|300
9H3Z|1|A|G|301
*
9H3Z|1|A|C|316
9H3Z|1|A|G|317
9H3Z|1|A|C|318
9H3Z|1|A|G|319
9H3Z|1|A|A|320
9H3Z|1|A|U|321
9H3Z|1|A|A|322
9H3Z|1|A|C|323
9H3Z|1|A|A|324
9H3Z|1|A|G|325
*
9H3Z|1|A|C|337
9H3Z|1|A|G|338
9H3Z|1|A|U|339
9H3Z|1|A|A|340
9H3Z|1|A|C|341

Current chains

Chain A

23S ribosomal rRNA

Nearby chains

Chain E

Large ribosomal subunit protein uL4

Chain U

Large ribosomal subunit protein uL24