J3_9H3Z_005

3D structure

PDB id

9H3Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

mature 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

9H3Z|1|A|U|686, 9H3Z|1|A|A|792, 9H3Z|1|A|A|793

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9H3Z_005 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.145

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

9H3Z|1|A|U|683
9H3Z|1|A|G|684
9H3Z|1|A|A|685
9H3Z|1|A|U|686
9H3Z|1|A|C|687
9H3Z|1|A|U|688
9H3Z|1|A|A|689
*
9H3Z|1|A|U|773
9H3Z|1|A|G|774
9H3Z|1|A|G|775
*
9H3Z|1|A|C|791
9H3Z|1|A|A|792
9H3Z|1|A|A|793
9H3Z|1|A|A|794

Current chains

Chain A

23S ribosomal rRNA

Nearby chains

Chain 2

Large ribosomal subunit protein bL34

Chain C

Large ribosomal subunit protein uL2