J3_9H4N_004

3D structure

PDB id

9H4N (explore in PDB, NAKB, or RNA 3D Hub)

Description

RPL13 (eL13)-mutant 80S ribosome from mouse

Experimental method

ELECTRON MICROSCOPY

Resolution

2.46 Å

Loop

Sequence

UUGAAAAGAAC*GAGUUCAAGAGGGCG*CA

Length

28 nucleotides

Bulged bases

9H4N|1|A2|G|409, 9H4N|1|A2|G|413

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9H4N|1|A2|U|380
9H4N|1|A2|U|381
9H4N|1|A2|G|382
9H4N|1|A2|A|383
9H4N|1|A2|A|384
9H4N|1|A2|A|385
9H4N|1|A2|A|386
9H4N|1|A2|G|387
9H4N|1|A2|A|388
9H4N|1|A2|A|389
9H4N|1|A2|C|390
*
9H4N|1|A2|G|401
9H4N|1|A2|A|402
9H4N|1|A2|G|403
9H4N|1|A2|U|404
9H4N|1|A2|U|405
9H4N|1|A2|C|406
9H4N|1|A2|A|407
9H4N|1|A2|A|408
9H4N|1|A2|G|409
9H4N|1|A2|A|410
9H4N|1|A2|G|411
9H4N|1|A2|G|412
9H4N|1|A2|G|413
9H4N|1|A2|C|414
9H4N|1|A2|G|415
*
9H4N|1|C2|C|19
9H4N|1|C2|A|20

Current chains

Chain A2

28S ribosomal RNA

Chain C2

5.8S ribosomal RNA

Nearby chains

Chain F2

Large ribosomal subunit protein uL4

Chain J2

60S ribosomal protein L17

Chain S2

Large ribosomal subunit protein uL24

Chain f2

Large ribosomal subunit protein eL39