J3_9H4N_005

3D structure

PDB id

9H4N (explore in PDB, NAKB, or RNA 3D Hub)

Description

RPL13 (eL13)-mutant 80S ribosome from mouse

Experimental method

ELECTRON MICROSCOPY

Resolution

2.46 Å

Loop

Sequence

CAGUC*GUGCG*CGAUG

Length

15 nucleotides

Bulged bases

9H4N|1|A2|C|711

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9H4N|1|A2|C|451
9H4N|1|A2|A|452
9H4N|1|A2|G|453
9H4N|1|A2|U|454
9H4N|1|A2|C|455
*
9H4N|1|A2|G|708
9H4N|1|A2|U|709
9H4N|1|A2|G|710
9H4N|1|A2|C|711
9H4N|1|A2|G|712
*
9H4N|1|A2|C|1106
9H4N|1|A2|G|1107
9H4N|1|A2|A|1108
9H4N|1|A2|U|1109
9H4N|1|A2|G|1110

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain H2

60S ribosomal protein L6

Chain Y2

Large ribosomal subunit protein eL32

Chain Z2

60S ribosomal protein L35a