J3_9H4N_006

3D structure

PDB id

9H4N (explore in PDB, NAKB, or RNA 3D Hub)

Description

RPL13 (eL13)-mutant 80S ribosome from mouse

Experimental method

ELECTRON MICROSCOPY

Resolution

2.46 Å

Loop

Sequence

CC*GAGGAAGACCGUCGCCG*CACGGGG

Length

26 nucleotides

Bulged bases

9H4N|1|A2|A|857, 9H4N|1|A2|A|866, 9H4N|1|A2|C|868, 9H4N|1|A2|C|869, 9H4N|1|A2|U|871, 9H4N|1|A2|C|1094

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9H4N|1|A2|C|719
9H4N|1|A2|C|720
*
9H4N|1|A2|G|853
9H4N|1|A2|A|854
9H4N|1|A2|G|855
9H4N|1|A2|G|856
9H4N|1|A2|A|857
9H4N|1|A2|A|858
9H4N|1|A2|G|859
9H4N|1|A2|A|866
9H4N|1|A2|C|868
9H4N|1|A2|C|869
9H4N|1|A2|G|870
9H4N|1|A2|U|871
9H4N|1|A2|C|872
9H4N|1|A2|G|873
9H4N|1|A2|C|874
9H4N|1|A2|C|875
9H4N|1|A2|G|876
*
9H4N|1|A2|C|1092
9H4N|1|A2|A|1093
9H4N|1|A2|C|1094
9H4N|1|A2|G|1095
9H4N|1|A2|G|1096
9H4N|1|A2|G|1097
9H4N|1|A2|G|1098

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain A1

Large ribosomal subunit protein uL30

Chain F2

Large ribosomal subunit protein uL4

Chain H2

60S ribosomal protein L6

Chain Y2

Large ribosomal subunit protein eL32