J3_9H4N_007

3D structure

PDB id

9H4N (explore in PDB, NAKB, or RNA 3D Hub)

Description

RPL13 (eL13)-mutant 80S ribosome from mouse

Experimental method

ELECTRON MICROSCOPY

Resolution

2.46 Å

Loop

Sequence

UGAACUA*UAG*CGAA

Length

14 nucleotides

Bulged bases

9H4N|1|A2|A|1347, 9H4N|1|A2|G|1454, 9H4N|1|A2|A|1455

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9H4N|1|A2|U|1344
9H4N|1|A2|G|1345
9H4N|1|A2|A|1346
9H4N|1|A2|A|1347
9H4N|1|A2|C|1348
9H4N|1|A2|U|1349
9H4N|1|A2|A|1350
*
9H4N|1|A2|U|1435
9H4N|1|A2|A|1436
9H4N|1|A2|G|1437
*
9H4N|1|A2|C|1453
9H4N|1|A2|G|1454
9H4N|1|A2|A|1455
9H4N|1|A2|A|1456

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain D2

Large ribosomal subunit protein uL2

Chain H1

60S ribosomal protein L15

Chain d2

Large ribosomal subunit protein eL37

Chain f2

Large ribosomal subunit protein eL39