J3_9H4N_010
3D structure
- PDB id
- 9H4N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- RPL13 (eL13)-mutant 80S ribosome from mouse
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.46 Å
Loop
- Sequence
- CAGUCGGAACGGAACGGGACGGGA*UCGGGCCC*GGAGCCUACG
- Length
- 42 nucleotides
- Bulged bases
- 9H4N|1|A2|C|2006, 9H4N|1|A2|C|2021, 9H4N|1|A2|U|2022, 9H4N|1|A2|C|2024
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9H4N|1|A2|C|1889
9H4N|1|A2|A|1890
9H4N|1|A2|G|1891
9H4N|1|A2|U|1892
9H4N|1|A2|C|1893
9H4N|1|A2|G|1894
9H4N|1|A2|G|1895
9H4N|1|A2|A|1896
9H4N|1|A2|A|1897
9H4N|1|A2|C|1898
9H4N|1|A2|G|1899
9H4N|1|A2|G|1900
9H4N|1|A2|A|1901
9H4N|1|A2|A|1902
9H4N|1|A2|C|1903
9H4N|1|A2|G|1904
9H4N|1|A2|G|1905
9H4N|1|A2|G|1906
9H4N|1|A2|A|1907
9H4N|1|A2|C|1908
9H4N|1|A2|G|1909
9H4N|1|A2|G|1910
9H4N|1|A2|G|1911
9H4N|1|A2|A|1912
*
9H4N|1|A2|U|2005
9H4N|1|A2|C|2006
9H4N|1|A2|G|2007
9H4N|1|A2|G|2008
9H4N|1|A2|G|2009
9H4N|1|A2|C|2010
9H4N|1|A2|C|2011
9H4N|1|A2|C|2012
*
9H4N|1|A2|G|2016
9H4N|1|A2|G|2017
9H4N|1|A2|A|2018
9H4N|1|A2|G|2019
9H4N|1|A2|C|2020
9H4N|1|A2|C|2021
9H4N|1|A2|U|2022
9H4N|1|A2|A|2023
9H4N|1|A2|C|2024
9H4N|1|A2|G|2025
Current chains
- Chain A2
- 28S ribosomal RNA
Nearby chains
- Chain A1
- Large ribosomal subunit protein uL30
- Chain F2
- Large ribosomal subunit protein uL4
- Chain H2
- 60S ribosomal protein L6
- Chain K2
- Large ribosomal subunit protein eL18
- Chain V2
- Large ribosomal subunit protein eL29
- Chain k2
- Large ribosomal subunit protein eL28
Coloring options: