J3_9H4N_011

3D structure

PDB id

9H4N (explore in PDB, NAKB, or RNA 3D Hub)

Description

RPL13 (eL13)-mutant 80S ribosome from mouse

Experimental method

ELECTRON MICROSCOPY

Resolution

2.46 Å

Loop

Sequence

CGAAGUG*CAA*UCUG

Length

14 nucleotides

Bulged bases

9H4N|1|A2|A|2151

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9H4N|1|A2|C|2148
9H4N|1|A2|G|2149
9H4N|1|A2|A|2150
9H4N|1|A2|A|2151
9H4N|1|A2|G|2152
9H4N|1|A2|U|2153
9H4N|1|A2|G|2154
*
9H4N|1|A2|C|2560
9H4N|1|A2|A|2561
9H4N|1|A2|A|2562
*
9H4N|1|A2|U|2574
9H4N|1|A2|C|2575
9H4N|1|A2|U|2576
9H4N|1|A2|G|2577

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain L2

Large ribosomal subunit protein eL19

Chain a2

60S ribosomal protein L34