J3_9H4N_013

3D structure

PDB id

9H4N (explore in PDB, NAKB, or RNA 3D Hub)

Description

RPL13 (eL13)-mutant 80S ribosome from mouse

Experimental method

ELECTRON MICROSCOPY

Resolution

2.46 Å

Loop

Sequence

UCGGUC*GGAGU*AA

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9H4N|1|A2|U|2195
9H4N|1|A2|C|2196
9H4N|1|A2|G|2197
9H4N|1|A2|G|2198
9H4N|1|A2|U|2199
9H4N|1|A2|C|2200
*
9H4N|1|A2|G|2270
9H4N|1|A2|G|2271
9H4N|1|A2|A|2272
9H4N|1|A2|G|2273
9H4N|1|A2|U|2274
*
9H4N|1|A2|A|2291
9H4N|1|A2|A|2292

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain C2

5.8S ribosomal RNA; 5.8S rRNA

Chain R2

60S ribosomal protein L23a

Chain a2

60S ribosomal protein L34

Chain e2

60S ribosomal protein L38

Chain f2

Large ribosomal subunit protein eL39