J3_9H4N_017

3D structure

PDB id

9H4N (explore in PDB, NAKB, or RNA 3D Hub)

Description

RPL13 (eL13)-mutant 80S ribosome from mouse

Experimental method

ELECTRON MICROSCOPY

Resolution

2.46 Å

Loop

Sequence

AGAAG*CC*GAAAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9H4N|1|A2|A|2353
9H4N|1|A2|G|2354
9H4N|1|A2|A|2355
9H4N|1|A2|A|2356
9H4N|1|A2|G|2357
*
9H4N|1|A2|C|2492
9H4N|1|A2|C|2493
*
9H4N|1|A2|G|2497
9H4N|1|A2|A|2498
9H4N|1|A2|A|2499
9H4N|1|A2|A|2500
9H4N|1|A2|A|2501
9H4N|1|A2|U|2502

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain D2

Large ribosomal subunit protein uL2

Chain a2

60S ribosomal protein L34

Chain j2

Large ribosomal subunit protein eL43