J3_9H4N_020

3D structure

PDB id

9H4N (explore in PDB, NAKB, or RNA 3D Hub)

Description

RPL13 (eL13)-mutant 80S ribosome from mouse

Experimental method

ELECTRON MICROSCOPY

Resolution

2.46 Å

Loop

Sequence

GUC*GCCUCACGAUCC*GAUGUC

Length

21 nucleotides

Bulged bases

9H4N|1|A2|C|3989, 9H4N|1|A2|U|4026

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9H4N|1|A2|G|3880
9H4N|1|A2|U|3881
9H4N|1|A2|C|3882
*
9H4N|1|A2|G|3983
9H4N|1|A2|C|3984
9H4N|1|A2|C|3985
9H4N|1|A2|U|3986
9H4N|1|A2|C|3987
9H4N|1|A2|A|3988
9H4N|1|A2|C|3989
9H4N|1|A2|G|3990
9H4N|1|A2|A|3991
9H4N|1|A2|U|3992
9H4N|1|A2|C|3993
9H4N|1|A2|C|3994
*
9H4N|1|A2|G|4022
9H4N|1|A2|A|4023
9H4N|1|A2|U|4024
9H4N|1|A2|G|4025
9H4N|1|A2|U|4026
9H4N|1|A2|C|4027

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain K2

Large ribosomal subunit protein eL18

Chain N2

Large ribosomal subunit protein eL21

Chain U2

60S ribosomal protein L27a

Chain i2

Large ribosomal subunit protein eL42

Chain n2

Transfer RNA; tRNA