J3_9H4N_023

3D structure

PDB id

9H4N (explore in PDB, NAKB, or RNA 3D Hub)

Description

RPL13 (eL13)-mutant 80S ribosome from mouse

Experimental method

ELECTRON MICROSCOPY

Resolution

2.46 Å

Loop

Sequence

GUUG*CGUUC*GUUGACGCACGUUC

Length

23 nucleotides

Bulged bases

9H4N|1|A2|U|4527, 9H4N|1|A2|G|4584, 9H4N|1|A2|C|4586, 9H4N|1|A2|A|4589, 9H4N|1|A2|C|4590

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9H4N|1|A2|G|4403
9H4N|1|A2|U|4404
9H4N|1|A2|U|4405
9H4N|1|A2|G|4406
*
9H4N|1|A2|C|4524
9H4N|1|A2|G|4525
9H4N|1|A2|U|4526
9H4N|1|A2|U|4527
9H4N|1|A2|C|4528
*
9H4N|1|A2|G|4581
9H4N|1|A2|U|4582
9H4N|1|A2|U|4583
9H4N|1|A2|G|4584
9H4N|1|A2|A|4585
9H4N|1|A2|C|4586
9H4N|1|A2|G|4587
9H4N|1|A2|C|4588
9H4N|1|A2|A|4589
9H4N|1|A2|C|4590
9H4N|1|A2|G|4591
9H4N|1|A2|U|4592
9H4N|1|A2|U|4593
9H4N|1|A2|C|4594

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain G1

60S ribosomal protein L14

Chain H2

60S ribosomal protein L6

Chain I2

Large ribosomal subunit protein uL13

Chain Z2

60S ribosomal protein L35a