J3_9H4N_030

3D structure

PDB id

9H4N (explore in PDB, NAKB, or RNA 3D Hub)

Description

RPL13 (eL13)-mutant 80S ribosome from mouse

Experimental method

ELECTRON MICROSCOPY

Resolution

2.46 Å

Loop

Sequence

AGAG*CAG*UGGAU

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9H4N|1|m2|A|818
9H4N|1|m2|G|819
9H4N|1|m2|A|820
9H4N|1|m2|G|821
*
9H4N|1|m2|C|831
9H4N|1|m2|A|832
9H4N|1|m2|G|833
*
9H4N|1|m2|U|846
9H4N|1|m2|G|847
9H4N|1|m2|G|848
9H4N|1|m2|A|849
9H4N|1|m2|U|850

Current chains

Chain m2

18S ribosomal RNA

Nearby chains

Chain L3

Small ribosomal subunit protein uS4

Chain Q3

Small ribosomal subunit protein eS24

Chain r2

Small ribosomal subunit protein eS4