J3_9H4N_036

3D structure

PDB id

9H4N (explore in PDB, NAKB, or RNA 3D Hub)

Description

RPL13 (eL13)-mutant 80S ribosome from mouse

Experimental method

ELECTRON MICROSCOPY

Resolution

2.46 Å

Loop

Sequence

CGGAC*GGGUG*UUAGAUG

Length

17 nucleotides

Bulged bases

9H4N|1|m2|G|1276, 9H4N|1|m2|G|1509

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9H4N|1|m2|C|1275
9H4N|1|m2|G|1276
9H4N|1|m2|G|1277
9H4N|1|m2|A|1278
9H4N|1|m2|C|1279
*
9H4N|1|m2|G|1322
9H4N|1|m2|G|1323
9H4N|1|m2|G|1324
9H4N|1|m2|U|1325
9H4N|1|m2|G|1326
*
9H4N|1|m2|U|1506
9H4N|1|m2|U|1507
9H4N|1|m2|A|1508
9H4N|1|m2|G|1509
9H4N|1|m2|A|1510
9H4N|1|m2|U|1511
9H4N|1|m2|G|1512

Current chains

Chain m2

18S ribosomal RNA

Nearby chains

Chain H3

Small ribosomal subunit protein uS14

Chain v2

40S ribosomal protein S10