J3_9H9H_011

3D structure

PDB id

9H9H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex 1 30S-IF1-IF2-IF3-GE81112

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

9H9H|1|A|U|1212, 9H9H|1|A|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9H9H_011 not in the Motif Atlas

Geometric match to J3_5J7L_053

Geometric discrepancy: 0.18

The information below is about J3_5J7L_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

9H9H|1|A|C|990
9H9H|1|A|U|991
9H9H|1|A|U|992
9H9H|1|A|G|993
9H9H|1|A|A|994
9H9H|1|A|C|995
9H9H|1|A|A|996
9H9H|1|A|U|997
*
9H9H|1|A|A|1044
9H9H|1|A|C|1045
9H9H|1|A|A|1046
9H9H|1|A|G|1047
*
9H9H|1|A|C|1210
9H9H|1|A|U|1211
9H9H|1|A|U|1212
9H9H|1|A|A|1213
9H9H|1|A|C|1214
9H9H|1|A|G|1215

Current chains

Chain A

16S RNA (1534-MER)

Nearby chains

Chain N

Small ribosomal subunit protein uS14