J3_9HA1_006

3D structure

PDB id

9HA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pooled 50S subunit C_(L22)- precursor states supplemented with Api137 - Canonical PET exit Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

4.17 Å

Loop

Sequence

UCGACC*GAAA*UA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9HA1_006 not in the Motif Atlas

Homologous match to J3_5J7L_043

Geometric discrepancy: 0.2706

The information below is about J3_5J7L_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92705.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW

Number of instances in this motif group

1

Unit IDs

9HA1|1|A|U|1344
9HA1|1|A|C|1345
9HA1|1|A|G|1346
9HA1|1|A|A|1347
9HA1|1|A|C|1348
9HA1|1|A|C|1349
*
9HA1|1|A|G|1382
9HA1|1|A|A|1383
9HA1|1|A|A|1384
9HA1|1|A|A|1385
*
9HA1|1|A|U|1402
9HA1|1|A|A|1403

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

Large ribosomal subunit protein bL34