J3_9HA3_004

3D structure

PDB id

9HA3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pooled 50S subunit C_(L22)-~H61 precursor states supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

3.62 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

9HA3|1|A|U|686, 9HA3|1|A|A|792, 9HA3|1|A|A|793

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9HA3_004 not in the Motif Atlas

Homologous match to J3_7A0S_004

Geometric discrepancy: 0.2574

The information below is about J3_7A0S_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46658.1

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

10

Unit IDs

9HA3|1|A|U|683
9HA3|1|A|G|684
9HA3|1|A|A|685
9HA3|1|A|U|686
9HA3|1|A|C|687
9HA3|1|A|U|688
9HA3|1|A|A|689
*
9HA3|1|A|U|773
9HA3|1|A|G|774
9HA3|1|A|G|775
*
9HA3|1|A|C|791
9HA3|1|A|A|792
9HA3|1|A|A|793
9HA3|1|A|A|794

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

Large ribosomal subunit protein bL34