J3_9HA5_005

3D structure

PDB id

9HA5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pooled 50S subunit C_L2 precursor states supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

9HA5|1|A|U|686, 9HA5|1|A|A|792, 9HA5|1|A|A|793

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9HA5_005 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.15

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

9HA5|1|A|U|683
9HA5|1|A|G|684
9HA5|1|A|A|685
9HA5|1|A|U|686
9HA5|1|A|C|687
9HA5|1|A|U|688
9HA5|1|A|A|689
*
9HA5|1|A|U|773
9HA5|1|A|G|774
9HA5|1|A|G|775
*
9HA5|1|A|C|791
9HA5|1|A|A|792
9HA5|1|A|A|793
9HA5|1|A|A|794

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

Large ribosomal subunit protein bL34

Chain C

Large ribosomal subunit protein uL2