J3_9HA5_006

3D structure

PDB id

9HA5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pooled 50S subunit C_L2 precursor states supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9HA5_006 not in the Motif Atlas

Homologous match to J3_4WF9_003

Geometric discrepancy: 0.1448

The information below is about J3_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_69816.1

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

9

Unit IDs

9HA5|1|A|C|698
9HA5|1|A|A|699
9HA5|1|A|G|700
*
9HA5|1|A|C|732
9HA5|1|A|G|733
9HA5|1|A|A|734
9HA5|1|A|A|735
9HA5|1|A|C|736
*
9HA5|1|A|G|760
9HA5|1|A|A|761
9HA5|1|A|U|762
9HA5|1|A|G|763

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

Large ribosomal subunit protein uL2