J3_9HFM_001

3D structure

PDB id

9HFM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translation-initiation state of human mitochondrial ribosome small subunit (State D)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAUU*AUUAACCU*AGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9HFM|1|A|G|687
9HFM|1|A|A|688
9HFM|1|A|U|689
9HFM|1|A|U|690
*
9HFM|1|A|A|823
9HFM|1|A|U|824
9HFM|1|A|U|825
9HFM|1|A|A|826
9HFM|1|A|A|827
9HFM|1|A|C|828
9HFM|1|A|C|829
9HFM|1|A|U|830
*
9HFM|1|A|A|856
9HFM|1|A|G|857
9HFM|1|A|C|858

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain J

28S ribosomal protein S12, mitochondrial

Chain M

28S ribosomal protein S16, mitochondrial

Chain T

28S ribosomal protein S25, mitochondrial