J3_9HFM_002

3D structure

PDB id

9HFM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translation-initiation state of human mitochondrial ribosome small subunit (State D)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CU*AAUAGAC*GG

Length

11 nucleotides

Bulged bases

9HFM|1|A|A|1019

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9HFM|1|A|C|973
9HFM|1|A|U|974
*
9HFM|1|A|A|1014
9HFM|1|A|A|1015
9HFM|1|A|U|1016
9HFM|1|A|A|1017
9HFM|1|A|G|1018
9HFM|1|A|A|1019
9HFM|1|A|C|1020
*
9HFM|1|A|G|1030
9HFM|1|A|G|1031

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain 2

Small ribosomal subunit protein mS37

Chain E

28S ribosomal protein S6, mitochondrial

Chain I

28S ribosomal protein S11, mitochondrial

Chain P

28S ribosomal protein S18c, mitochondrial

Chain Q

Small ribosomal subunit protein bS21m