J3_9HFM_005

3D structure

PDB id

9HFM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translation-initiation state of human mitochondrial ribosome small subunit (State D)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGUAAUC*GAUCAACCUCAC*GCAA

Length

23 nucleotides

Bulged bases

9HFM|1|A|U|1229, 9HFM|1|A|C|1230, 9HFM|1|A|A|1232

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9HFM|1|A|U|1210
9HFM|1|A|G|1211
9HFM|1|A|U|1212
9HFM|1|A|A|1213
9HFM|1|A|A|1214
9HFM|1|A|U|1215
9HFM|1|A|C|1216
*
9HFM|1|A|G|1227
9HFM|1|A|A|1228
9HFM|1|A|U|1229
9HFM|1|A|C|1230
9HFM|1|A|A|1231
9HFM|1|A|A|1232
9HFM|1|A|C|1233
9HFM|1|A|C|1234
9HFM|1|A|U|1235
9HFM|1|A|C|1236
9HFM|1|A|A|1237
9HFM|1|A|C|1238
*
9HFM|1|A|G|1351
9HFM|1|A|C|1352
9HFM|1|A|A|1353
9HFM|1|A|A|1354

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain H

28S ribosomal protein S10, mitochondrial

Chain K

28S ribosomal protein S14, mitochondrial