J3_9HFN_005

3D structure

PDB id

9HFN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translation-initiation state of human mitochondrial ribosome small subunit (State E)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGUAAUC*GAUCAACCUCAC*GCAA

Length

23 nucleotides

Bulged bases

9HFN|1|A|U|1229, 9HFN|1|A|C|1230, 9HFN|1|A|A|1231, 9HFN|1|A|A|1232

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9HFN|1|A|U|1210
9HFN|1|A|G|1211
9HFN|1|A|U|1212
9HFN|1|A|A|1213
9HFN|1|A|A|1214
9HFN|1|A|U|1215
9HFN|1|A|C|1216
*
9HFN|1|A|G|1227
9HFN|1|A|A|1228
9HFN|1|A|U|1229
9HFN|1|A|C|1230
9HFN|1|A|A|1231
9HFN|1|A|A|1232
9HFN|1|A|C|1233
9HFN|1|A|C|1234
9HFN|1|A|U|1235
9HFN|1|A|C|1236
9HFN|1|A|A|1237
9HFN|1|A|C|1238
*
9HFN|1|A|G|1351
9HFN|1|A|C|1352
9HFN|1|A|A|1353
9HFN|1|A|A|1354

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain H

28S ribosomal protein S10, mitochondrial

Chain K

28S ribosomal protein S14, mitochondrial