J3_9HFO_006

3D structure

PDB id

9HFO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translation-initiation state of human mitochondrial ribosome small subunit (State G)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGUAAUC*GAUCAACCUCAC*GCAA

Length

23 nucleotides

Bulged bases

9HFO|1|A|U|1229, 9HFO|1|A|C|1230, 9HFO|1|A|A|1231, 9HFO|1|A|A|1232

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9HFO|1|A|U|1210
9HFO|1|A|G|1211
9HFO|1|A|U|1212
9HFO|1|A|A|1213
9HFO|1|A|A|1214
9HFO|1|A|U|1215
9HFO|1|A|C|1216
*
9HFO|1|A|G|1227
9HFO|1|A|A|1228
9HFO|1|A|U|1229
9HFO|1|A|C|1230
9HFO|1|A|A|1231
9HFO|1|A|A|1232
9HFO|1|A|C|1233
9HFO|1|A|C|1234
9HFO|1|A|U|1235
9HFO|1|A|C|1236
9HFO|1|A|A|1237
9HFO|1|A|C|1238
*
9HFO|1|A|G|1351
9HFO|1|A|C|1352
9HFO|1|A|A|1353
9HFO|1|A|A|1354

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain H

28S ribosomal protein S10, mitochondrial

Chain K

28S ribosomal protein S14, mitochondrial