J3_9HMW_004

3D structure

PDB id

9HMW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Arabidopsis thaliana 80S ribosome OVAC mutant in complex with P- and E-site tRNAs and mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.25 Å

Loop

Sequence

AC*GAUACUU*AGUCU

Length

14 nucleotides

Bulged bases

9HMW|1|3|U|64, 9HMW|1|3|C|66

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9HMW|1|3|A|48
9HMW|1|3|C|49
*
9HMW|1|3|G|62
9HMW|1|3|A|63
9HMW|1|3|U|64
9HMW|1|3|A|65
9HMW|1|3|C|66
9HMW|1|3|U|67
9HMW|1|3|U|68
*
9HMW|1|3|A|100
9HMW|1|3|G|101
9HMW|1|3|U|102
9HMW|1|3|C|103
9HMW|1|3|U|104

Current chains

Chain 3

Ribosomal RNA 5.8S

Nearby chains

Chain AY

Large ribosomal subunit protein eL37z

Chain BA

Large ribosomal subunit protein eL39z/eL39x

Chain BN

Large ribosomal subunit protein uL23y

Chain BP

Large ribosomal subunit protein uL29x